DNase-seq_ENCSR913NYL
DNase-seq ENCSR913NYL [biosample_summary="Homo sapiens renal pelvis tissue male embryo (108 days)"]
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| Id: | DNase-seq/ENCSR913NYL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR913NYL [biosample_summary="Homo sapiens renal pelvis tissue male embryo (108 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (108 days) output_type: peaks audit_warning: Alignment file {ENCFF804ZKG|/files/ENCFF804ZKG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 29317083 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR913NYL | float |
DNase-seq_ENCSR913NYL |
DNase-seq ENCSR913NYL [biosample_summary="Homo sapiens renal pelvis tissue male embryo (108 days)"]
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[0.274, 30] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF579HAX.bed.gz | 609.47 KB | e07b873d6b449e9a2a9a61ae9740f81c |
| ENCFF579HAX.bed.gz.dvc | 100.0 B | 7bd50af5d7681c94acc8e2d1ad89c777 |
| ENCFF579HAX.tabix.bed.gz | 541.07 KB | 62089d7c606e1ab51a4a831b69eb810d |
| ENCFF579HAX.tabix.bed.gz.dvc | 106.0 B | f8e3cd2aa5d43f85fa4b4bd17077eae7 |
| ENCFF579HAX.tabix.bed.gz.tbi | 323.29 KB | 97991af3f55635cb9f2395409b40e394 |
| ENCFF579HAX.tabix.bed.gz.tbi.dvc | 110.0 B | 802aded2a64ddfea95d351efecd13f3d |
| genomic_resource.yaml | 1.83 KB | b64a23095ba75868ded278625d3ef411 |
| genomic_resource_original.yaml | 1.73 KB | 11810118b2701d1b7b5c9936136fe271 |
| statistics/ |