Resource

Id DNase-seq/ENCSR911YVVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR911YVV [biosample_summary="Homo sapiens renal pelvis tissue female embryo (89 days)"]
Description
Labels
  • accession: ENCSR911YVV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001224/
  • biosample_summary: Homo sapiens renal pelvis tissue female embryo (89 days)
  • date_created: 2015-09-16T21:42:31.239574+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR911YVV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (89 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR911YVV float

DNase-seq_ENCSR911YVV
DNase-seq ENCSR911YVV [biosample_summary="Homo sapiens renal pelvis tissue female embryo (89 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR911YVV [4, 2.9e+03]
n
19,143,970
mean
66.5
sd
84.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 191439700.60% 127258
chr1 1696349 0.68% 11290
chr2 1555374 0.64% 10334
chr3 1223117 0.62% 8131
chr4 1028233 0.54% 6820
chr5 1060995 0.58% 7045
chr6 1136422 0.67% 7557
chr7 1001227 0.63% 6654
chr8 888141 0.61% 5900
chr9 797130 0.58% 5297
chr10 949147 0.71% 6316
chr11 978551 0.72% 6502
chr12 940860 0.71% 6258
chr13 546819 0.48% 3635
chr14 615715 0.58% 4092
chr15 616320 0.60% 4100
chr16 612374 0.68% 4076
chr17 782650 0.94% 5205
chr18 463510 0.58% 3079
chr19 623678 1.06% 4155
chr20 484331 0.75% 3224
chr21 232385 0.50% 1542
chr22 340583 0.67% 2265
chrX 568259 0.36% 3769
chrY 1800 <0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 127258 21 410 150.43 150
global segment-length histogram

Files

Filename Size md5
ENCFF012SAA.bed.gz 1.2 MB 94c588eeae84d666ddce7bf5dfbcae80
ENCFF012SAA.tabix.bed.gz 1.03 MB 93fe4aa03af0d949738fe06561d416e6
ENCFF012SAA.tabix.bed.gz.tbi 547.6 KB 3bcc0794d8493b258d1c37d22bb03fc6
genomic_resource.yaml 1.4 KB 7e66a5e756388f67e96568a2e9ab1828
statistics/