DNase-seq_ENCSR909HFI
DNase-seq ENCSR909HFI [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)"]
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| Id: | DNase-seq/ENCSR909HFI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR909HFI [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN958DUD|/analyses/ENCAN958DUD/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF748SML|/files/ENCFF748SML/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR909HFI | float |
DNase-seq_ENCSR909HFI |
DNase-seq ENCSR909HFI [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)"]
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[7, 1.13e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF558OLX.bed.gz | 973.98 KB | 59b28fcf86e97e4632b57a4035a0cb5e |
| ENCFF558OLX.bed.gz.dvc | 100.0 B | 942e8bf5b44d0831a89e44ecfc7886f3 |
| ENCFF558OLX.tabix.bed.gz | 832.58 KB | d0eaa4d897ea4f6e68892e5884757057 |
| ENCFF558OLX.tabix.bed.gz.dvc | 106.0 B | 590e89c84e780c3854064542148be28b |
| ENCFF558OLX.tabix.bed.gz.tbi | 395.39 KB | d2806b5017fde2b61ad42061c8fb34d3 |
| ENCFF558OLX.tabix.bed.gz.tbi.dvc | 110.0 B | dc2636f79e40026af7335c5298ad0062 |
| genomic_resource.yaml | 2.22 KB | cb62eecd4d9b5a7cbb278178c658a34d |
| genomic_resource_original.yaml | 2.12 KB | a4d7eb0fec78ecc393c85ba4b0463581 |
| statistics/ |