Resource

Id DNase-seq/ENCSR908MUUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR908MUU [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR908MUU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002740/
  • biosample_summary: Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)
  • date_created: 2020-11-04T06:14:32.337133+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR908MUU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR908MUU float

DNase-seq_ENCSR908MUU

DNase-seq ENCSR908MUU [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
HISTOGRAM FOR DNase-seq_ENCSR908MUU [0.0742, 25.9]
n
11,731,509
mean
2.85
sd
3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 117315090.36% 62381
chr1 1105535 0.44% 5844
chr2 905558 0.37% 4863
chr3 625878 0.32% 3324
chr4 449006 0.24% 2373
chr5 559640 0.31% 3022
chr6 596934 0.35% 3153
chr7 574135 0.36% 3080
chr8 479956 0.33% 2597
chr9 547093 0.40% 2871
chr10 624571 0.47% 3295
chr11 692514 0.51% 3736
chr12 531533 0.40% 2783
chr13 220366 0.19% 1183
chr14 377611 0.35% 2005
chr15 398727 0.39% 2130
chr16 445609 0.49% 2359
chr17 635304 0.76% 3366
chr18 202909 0.25% 1127
chr19 629467 1.07% 3202
chr20 362998 0.56% 1974
chr21 134113 0.29% 743
chr22 349529 0.69% 1865
chrX 281913 0.18% 1480
chrY 610 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 62381 2 878 188.06 180
global segment-length histogram

Files

Filename Size md5
ENCFF554SUA.bed.gz 692.05 KB b66298b615d9fd4a86762be4644c9231
ENCFF554SUA.tabix.bed.gz 628.5 KB 984bbd64b2452e091f350b5df198f784
ENCFF554SUA.tabix.bed.gz.tbi 265.0 KB 543fbca22831c6659da8406e22c39321
genomic_resource.yaml 1.47 KB 144bc64ccb83d7283a9067edb1b58287
statistics/