| Id: | DNase-seq/ENCSR904LMG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR904LMG [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; dorsolateral prefrontal cortex tissue male adult (87 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (87 years) with Cognitive impairment, Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF855CLY|/files/ENCFF855CLY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR904LMG | float |
DNase-seq_ENCSR904LMG |
DNase-seq ENCSR904LMG [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; dorsolateral prefrontal cortex tissue male adult (87 years)"]
|
 |
[0.0582, 10.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF577DIL.bed.gz | 704.84 KB | 2b426ac1da8d0cf13cc16ed5c0b27f9f |
| ENCFF577DIL.bed.gz.dvc | 100.0 B | c6e3160a6d2f6846eaca90b38b636645 |
| ENCFF577DIL.tabix.bed.gz | 646.37 KB | c96421652125dd2b509dc9a59a954ae7 |
| ENCFF577DIL.tabix.bed.gz.dvc | 106.0 B | f9391eaf2a4cf7c39fdc0019be5ba83a |
| ENCFF577DIL.tabix.bed.gz.tbi | 245.57 KB | e7459e38db6f944e9937b1a8abaf9950 |
| ENCFF577DIL.tabix.bed.gz.tbi.dvc | 110.0 B | 55fa2c94d543af75fe1b7cfb34772a4f |
| genomic_resource.yaml | 2.34 KB | b11b88208918d2c0190cf2b7edfb2dbe |
| genomic_resource_original.yaml | 2.17 KB | 8289c4ddfc511419fd441bc5012751c6 |
| statistics/ |