DNase-seq_ENCSR904GDU
DNase-seq ENCSR904GDU [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)"]
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| Id: | DNase-seq/ENCSR904GDU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR904GDU [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) output_type: peaks audit_warning: Alignment file {ENCFF884KLV|/files/ENCFF884KLV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31069274 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR904GDU | float |
DNase-seq_ENCSR904GDU |
DNase-seq ENCSR904GDU [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)"]
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[0.323, 70.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF078POX.bed.gz | 420.18 KB | cc9e3c4281192d5c02354c1ef004afbb |
| ENCFF078POX.bed.gz.dvc | 100.0 B | 96cdedde89c57b07078536d5cc7d041f |
| ENCFF078POX.tabix.bed.gz | 380.66 KB | b843d0301c78c36d2f4e4c568f6325a7 |
| ENCFF078POX.tabix.bed.gz.dvc | 106.0 B | de9a7e531322d3396b5712056645d37a |
| ENCFF078POX.tabix.bed.gz.tbi | 202.41 KB | 17273bfe4271dda78fb27664f2cb7817 |
| ENCFF078POX.tabix.bed.gz.tbi.dvc | 110.0 B | a2922e700a5a56775e8af0df4dd0a8de |
| genomic_resource.yaml | 1.87 KB | f13f2ba96db79484f4a19ebee42a7b4b |
| genomic_resource_original.yaml | 1.76 KB | c049170e0d6f724c8c447e31d6166478 |
| statistics/ |