Resource

Id DNase-seq/ENCSR904GDUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR904GDU [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)"]
Description
Labels
  • accession: ENCSR904GDU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)
  • date_created: 2020-04-20T23:45:42.883076+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR904GDU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR904GDU float

DNase-seq_ENCSR904GDU
DNase-seq ENCSR904GDU [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR904GDU [0.323, 70.6]
n
6,904,357
mean
7.78
sd
8.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 69043570.21% 37944
chr1 703719 0.28% 3871
chr2 476687 0.20% 2628
chr3 368808 0.19% 2013
chr4 229986 0.12% 1252
chr5 308191 0.17% 1677
chr6 390543 0.23% 2145
chr7 317581 0.20% 1755
chr8 247746 0.17% 1394
chr9 278826 0.20% 1536
chr10 297644 0.22% 1659
chr11 368327 0.27% 2017
chr12 352402 0.26% 1940
chr13 138000 0.12% 759
chr14 244261 0.23% 1347
chr15 221793 0.22% 1234
chr16 287768 0.32% 1574
chr17 435123 0.52% 2362
chr18 99600 0.12% 566
chr19 481626 0.82% 2581
chr20 194780 0.30% 1080
chr21 82213 0.18% 449
chr22 174891 0.34% 979
chrX 196628 0.13% 1085
chrY 7214 0.01% 41
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37944 8 680 181.96 180
global segment-length histogram

Files

Filename Size md5
ENCFF078POX.bed.gz 420.18 KB cc9e3c4281192d5c02354c1ef004afbb
ENCFF078POX.tabix.bed.gz 380.66 KB b843d0301c78c36d2f4e4c568f6325a7
ENCFF078POX.tabix.bed.gz.tbi 202.41 KB 17273bfe4271dda78fb27664f2cb7817
genomic_resource.yaml 1.87 KB f13f2ba96db79484f4a19ebee42a7b4b
statistics/