DNase-seq_ENCSR896LMT
DNase-seq ENCSR896LMT [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR896LMT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR896LMT [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF242VNV|/files/ENCFF242VNV/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR896LMT | float |
DNase-seq_ENCSR896LMT |
DNase-seq ENCSR896LMT [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0624, 12] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF338NXN.bed.gz | 786.39 KB | 9acba9e59bf340d978ef2e961c6ebabd |
| ENCFF338NXN.bed.gz.dvc | 100.0 B | 996c2f3962245198a589daca50846c95 |
| ENCFF338NXN.tabix.bed.gz | 719.3 KB | 033c510c360a09a0a1c34ec0f4de701c |
| ENCFF338NXN.tabix.bed.gz.dvc | 106.0 B | 6a6c482a90da0a59be44dc96d52b03cc |
| ENCFF338NXN.tabix.bed.gz.tbi | 245.68 KB | 646e4e96d47aaf0c446451851cdf0b9c |
| ENCFF338NXN.tabix.bed.gz.tbi.dvc | 110.0 B | 84a188bfca354a08457451a9aea34ae8 |
| genomic_resource.yaml | 2.12 KB | 9847e0b8a28a0eaa3000bc7cdb731331 |
| genomic_resource_original.yaml | 2.0 KB | c00717d24598dd6d730e1f22c4a6eeb8 |
| statistics/ |