Resource

Id DNase-seq/ENCSR895TUVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR895TUV [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (87 years)"]
Description
Labels
  • accession: ENCSR895TUV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (87 years)
  • date_created: 2020-12-10T18:27:51.619214+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR895TUV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (87 years) with mild cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR895TUV float

DNase-seq_ENCSR895TUV
DNase-seq ENCSR895TUV [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (87 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR895TUV [0.05, 25]
n
18,425,177
mean
2.06
sd
2.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 184251770.57% 99632
chr1 1787418 0.72% 9543
chr2 1379321 0.57% 7584
chr3 1093064 0.55% 5926
chr4 784621 0.41% 4265
chr5 957664 0.53% 5246
chr6 1025965 0.60% 5556
chr7 909237 0.57% 4983
chr8 765521 0.53% 4185
chr9 818597 0.59% 4390
chr10 889966 0.67% 4817
chr11 1023664 0.76% 5501
chr12 907598 0.68% 4877
chr13 421597 0.37% 2311
chr14 607289 0.57% 3269
chr15 619419 0.61% 3344
chr16 686966 0.76% 3731
chr17 905963 1.09% 4785
chr18 363696 0.45% 2049
chr19 843810 1.44% 4334
chr20 539418 0.84% 2959
chr21 205803 0.44% 1156
chr22 409562 0.81% 2193
chrX 478629 0.31% 2625
chrY 389 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 99632 1 840 184.93 180
global segment-length histogram

Files

Filename Size md5
ENCFF746VVI.bed.gz 1.08 MB 61890eaaf2491652119b4b66a608ab6b
ENCFF746VVI.tabix.bed.gz 999.78 KB 55e293496a6b61e139b3fb2092d76a42
ENCFF746VVI.tabix.bed.gz.tbi 424.69 KB 8325d8596827df86775f0f2460a12d02
genomic_resource.yaml 1.42 KB ccec18834817180a67ed1d7308fe316f
statistics/