DNase-seq_ENCSR895KTN
DNase-seq ENCSR895KTN [biosample_summary="Homo sapiens HAP-1"]
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| Id: | DNase-seq/ENCSR895KTN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR895KTN [biosample_summary="Homo sapiens HAP-1"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF162WTC|/files/ENCFF162WTC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.40. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR895KTN | float |
DNase-seq_ENCSR895KTN |
DNase-seq ENCSR895KTN [biosample_summary="Homo sapiens HAP-1"]
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[0.0412, 65.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF061YKH.bed.gz | 1.49 MB | 637cb96686f328541de2f7a645c8126c |
| ENCFF061YKH.bed.gz.dvc | 101.0 B | ff39f9d3abe9f7ff3f9b96fa9d6f0e8d |
| ENCFF061YKH.tabix.bed.gz | 1.37 MB | 5517a3b76d7eb2d98f1d746592215053 |
| ENCFF061YKH.tabix.bed.gz.dvc | 107.0 B | ac360292bc754adc914aba0f2b8421cf |
| ENCFF061YKH.tabix.bed.gz.tbi | 481.69 KB | a7357d606e21a00e9d7b099cc4d91274 |
| ENCFF061YKH.tabix.bed.gz.tbi.dvc | 110.0 B | 750354403f7f7b57a4a789112c692e8a |
| genomic_resource.yaml | 1.91 KB | be8cacadb6a84a47d94eb69ed9d61fff |
| genomic_resource_original.yaml | 1.84 KB | bcf0fd55dbfb614e28d7b3a0f18f6abf |
| statistics/ |