Resource

Id DNase-seq/ENCSR892LQTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR892LQT [biosample_summary="Homo sapiens effector memory CD8-positive, alpha-beta T cell male adult (33 years)"]
Description
Labels
  • accession: ENCSR892LQT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000913/
  • biosample_summary: Homo sapiens effector memory CD8-positive, alpha-beta T cell male adult (33 years)
  • date_created: 2021-08-23T23:11:18.199243+00:00
  • date_released: 2021-09-02
  • doi: 10.17989/ENCSR892LQT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR892LQT float

DNase-seq_ENCSR892LQT
DNase-seq ENCSR892LQT [biosample_summary="Homo sapiens effector memory CD8-positive, alpha-beta T cell male adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR892LQT [0.09, 47]
n
10,684,774
mean
4.02
sd
4.84

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 106847740.33% 53020
chr1 1089070 0.44% 5373
chr2 737127 0.30% 3684
chr3 582324 0.29% 2886
chr4 365397 0.19% 1800
chr5 483066 0.27% 2424
chr6 635022 0.37% 3107
chr7 484405 0.30% 2426
chr8 384177 0.26% 1962
chr9 432457 0.31% 2143
chr10 493208 0.37% 2445
chr11 544308 0.40% 2722
chr12 541748 0.41% 2680
chr13 212999 0.19% 1062
chr14 381671 0.36% 1900
chr15 341883 0.34% 1721
chr16 444409 0.49% 2211
chr17 647046 0.78% 3186
chr18 175508 0.22% 880
chr19 692280 1.18% 3334
chr20 304881 0.47% 1509
chr21 120303 0.26% 594
chr22 253302 0.50% 1295
chrX 324567 0.21% 1612
chrY 13616 0.02% 64
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53020 1 1020 201.52 200
global segment-length histogram

Files

Filename Size md5
ENCFF876SSA.bed.gz 594.58 KB aa211177aa84846ff72e3c5df32de575
ENCFF876SSA.tabix.bed.gz 546.81 KB d62c327d20b74f68b090d89ac130ee32
ENCFF876SSA.tabix.bed.gz.tbi 244.04 KB 859c06ffa189744fdca64a571f49c967
genomic_resource.yaml 1.31 KB dae935f3e61551998c0ffe13e27fa493
statistics/