Resource

Id DNase-seq/ENCSR891VOVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR891VOV [biosample_summary="Homo sapiens B cell female adult (34 years)"]
Description
Labels
  • accession: ENCSR891VOV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000236/
  • biosample_summary: Homo sapiens B cell female adult (34 years)
  • date_created: 2015-09-16T21:42:01.956765+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR891VOV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (34 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR891VOV float

DNase-seq_ENCSR891VOV
DNase-seq ENCSR891VOV [biosample_summary="Homo sapiens B cell female adult (34 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR891VOV [0.3, 28.6]
n
7,059,776
mean
4.62
sd
4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 70597760.22% 34735
chr1 684908 0.28% 3335
chr2 511785 0.21% 2527
chr3 427979 0.22% 2128
chr4 277173 0.15% 1392
chr5 337152 0.19% 1667
chr6 446989 0.26% 2193
chr7 337231 0.21% 1717
chr8 279479 0.19% 1402
chr9 267617 0.19% 1340
chr10 305090 0.23% 1521
chr11 366956 0.27% 1797
chr12 372201 0.28% 1809
chr13 148766 0.13% 717
chr14 249640 0.23% 1184
chr15 217261 0.21% 1088
chr16 266564 0.30% 1305
chr17 400745 0.48% 1946
chr18 122551 0.15% 621
chr19 428299 0.73% 1983
chr20 177109 0.27% 896
chr21 75010 0.16% 367
chr22 156383 0.31% 792
chrX 202748 0.13% 1007
chrY 140 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34735 8 880 203.25 200
global segment-length histogram

Files

Filename Size md5
ENCFF245RKH.bed.gz 369.02 KB a381ed509ba480bde3576e1ae8e5844e
ENCFF245RKH.tabix.bed.gz 334.21 KB e3d29527242894b8b6d05f260a15f5b0
ENCFF245RKH.tabix.bed.gz.tbi 193.07 KB 4d0cd36dda096693b82248b064d34ff0
genomic_resource.yaml 1.8 KB 15707de356299583c250389dc94c3770
statistics/