Resource

Id DNase-seq/ENCSR889YWJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR889YWJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"]
Description
Labels
  • accession: ENCSR889YWJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours
  • date_created: 2020-04-20T23:45:31.458546+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR889YWJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR889YWJ float

DNase-seq_ENCSR889YWJ
DNase-seq ENCSR889YWJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR889YWJ [0.343, 55.8]
n
8,923,395
mean
7.24
sd
7.74

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89233950.28% 48452
chr1 901354 0.36% 4901
chr2 641279 0.26% 3510
chr3 492762 0.25% 2676
chr4 296549 0.16% 1612
chr5 394669 0.22% 2182
chr6 519536 0.30% 2841
chr7 405593 0.25% 2201
chr8 337325 0.23% 1879
chr9 369627 0.27% 1996
chr10 398126 0.30% 2202
chr11 449449 0.33% 2424
chr12 450456 0.34% 2438
chr13 177748 0.16% 940
chr14 302786 0.28% 1655
chr15 296835 0.29% 1647
chr16 384548 0.43% 2036
chr17 530953 0.64% 2869
chr18 145185 0.18% 808
chr19 605502 1.03% 3131
chr20 262420 0.41% 1453
chr21 101141 0.22% 552
chr22 221436 0.44% 1210
chrX 229502 0.15% 1243
chrY 8614 0.02% 46
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48452 12 680 184.17 180
global segment-length histogram

Files

Filename Size md5
ENCFF846TKR.bed.gz 532.33 KB 21b5ca7b4a9bfc1e1cb1d463ee323bcb
ENCFF846TKR.tabix.bed.gz 477.72 KB 2abdef474f7466429f73eec84374610c
ENCFF846TKR.tabix.bed.gz.tbi 241.66 KB 2ddb08cfe9b27b6e819a67d1bcefa7d3
genomic_resource.yaml 2.46 KB 6077ab92ef43ea27f2635651e89c9921
statistics/