| Id: | DNase-seq/ENCSR889YWJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR889YWJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF170NWG|/files/ENCFF170NWG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 29221288 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR889YWJ | float |
DNase-seq_ENCSR889YWJ |
DNase-seq ENCSR889YWJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"]
|
 |
[0.343, 55.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF846TKR.bed.gz | 532.33 KB | 21b5ca7b4a9bfc1e1cb1d463ee323bcb |
| ENCFF846TKR.bed.gz.dvc | 100.0 B | 203f0a0decccde173a8866aa3479cbbb |
| ENCFF846TKR.tabix.bed.gz | 477.72 KB | 2abdef474f7466429f73eec84374610c |
| ENCFF846TKR.tabix.bed.gz.dvc | 106.0 B | b891cbc3b8f4366d1de09b73445d879d |
| ENCFF846TKR.tabix.bed.gz.tbi | 241.66 KB | 2ddb08cfe9b27b6e819a67d1bcefa7d3 |
| ENCFF846TKR.tabix.bed.gz.tbi.dvc | 110.0 B | d14152b15e00df0a3ccc1294283e9afd |
| genomic_resource.yaml | 2.46 KB | 6077ab92ef43ea27f2635651e89c9921 |
| genomic_resource_original.yaml | 2.23 KB | 44013ca63b73dcfd3ee5a0932a289b27 |
| statistics/ |