DNase-seq_ENCSR889WKL
DNase-seq ENCSR889WKL [biosample_summary="Homo sapiens HL-60"]
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| Id: | DNase-seq/ENCSR889WKL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR889WKL [biosample_summary="Homo sapiens HL-60"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF924PTR|/files/ENCFF924PTR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.40. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR889WKL | float |
DNase-seq_ENCSR889WKL |
DNase-seq ENCSR889WKL [biosample_summary="Homo sapiens HL-60"]
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[0.0369, 143] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF773SFA.bed.gz | 1.39 MB | bcf149031a45ab3aed8b48ef5c30ccaa |
| ENCFF773SFA.bed.gz.dvc | 101.0 B | c24e9058f1743cca2978052b5ff5accf |
| ENCFF773SFA.tabix.bed.gz | 1.27 MB | d63892ea00474f8223ba09b49552f95f |
| ENCFF773SFA.tabix.bed.gz.dvc | 107.0 B | 9f54b4f8c85c977a738768b84aa00d4d |
| ENCFF773SFA.tabix.bed.gz.tbi | 458.44 KB | f5dd08c65f320d525d24e91b0e3f9483 |
| ENCFF773SFA.tabix.bed.gz.tbi.dvc | 110.0 B | f69f75e4a1dda1b2e9bf9186136abe56 |
| genomic_resource.yaml | 1.91 KB | adc3b1611ed8b5f12cb7a7bf2f773ac5 |
| genomic_resource_original.yaml | 1.84 KB | fd1c6b5811bc7741d685002ced09e792 |
| statistics/ |