Resource

Id DNase-seq/ENCSR889ONKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR889ONK [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (42 years)"]
Description
Labels
  • accession: ENCSR889ONK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000900/
  • biosample_summary: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (42 years)
  • date_created: 2021-08-31T15:47:27.628548+00:00
  • date_released: 2021-09-10
  • doi: 10.17989/ENCSR889ONK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR889ONK float

DNase-seq_ENCSR889ONK
DNase-seq ENCSR889ONK [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (42 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR889ONK [0.131, 37.5]
n
9,110,884
mean
4.32
sd
4.74

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 91108840.28% 48484
chr1 916936 0.37% 4847
chr2 632799 0.26% 3369
chr3 503324 0.25% 2648
chr4 321432 0.17% 1707
chr5 402369 0.22% 2160
chr6 518775 0.30% 2738
chr7 421429 0.26% 2264
chr8 346755 0.24% 1879
chr9 374358 0.27% 1998
chr10 404129 0.30% 2191
chr11 454173 0.34% 2408
chr12 472529 0.35% 2512
chr13 181497 0.16% 945
chr14 322378 0.30% 1686
chr15 294518 0.29% 1574
chr16 374963 0.42% 1982
chr17 561395 0.67% 2988
chr18 140719 0.18% 774
chr19 590938 1.01% 3056
chr20 255872 0.40% 1416
chr21 111756 0.24% 598
chr22 233150 0.46% 1245
chrX 263867 0.17% 1442
chrY 10823 0.02% 57
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48484 1 720 187.92 180
global segment-length histogram

Files

Filename Size md5
ENCFF341BQT.bed.gz 540.59 KB d58e44e9122cfec45c88fcb3c2f5020a
ENCFF341BQT.tabix.bed.gz 492.06 KB 937c623b3ce98132449ac4f1dff954f2
ENCFF341BQT.tabix.bed.gz.tbi 231.96 KB fed9d8dbaffeb2774079d11146509aa8
genomic_resource.yaml 1.32 KB c6cf63befa419800c5f60dbee8f26456
statistics/