DNase-seq_ENCSR888ZIZ
DNase-seq ENCSR888ZIZ [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (85 years)"]
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| Id: | DNase-seq/ENCSR888ZIZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR888ZIZ [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (85 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (85 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF491SNH|/files/ENCFF491SNH/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR888ZIZ | float |
DNase-seq_ENCSR888ZIZ |
DNase-seq ENCSR888ZIZ [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (85 years)"]
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[0.0554, 16.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF570VBF.bed.gz | 954.22 KB | 2ff0f26b40378ab3938d6c85ee6e6e4f |
| ENCFF570VBF.bed.gz.dvc | 100.0 B | f440a154ce139e55b3fe8c339ab647d5 |
| ENCFF570VBF.tabix.bed.gz | 873.29 KB | 57ba150fa0c62f6b58471976fc7bc142 |
| ENCFF570VBF.tabix.bed.gz.dvc | 106.0 B | fe66e9ddda1ed83b67c87d97e933e55c |
| ENCFF570VBF.tabix.bed.gz.tbi | 290.96 KB | eebaec1ba716f2375371f986b72da77c |
| ENCFF570VBF.tabix.bed.gz.tbi.dvc | 110.0 B | 3b35686c257a57b9a7db36c3edb66f06 |
| genomic_resource.yaml | 2.06 KB | 81e137aa3394f1c418de3d8c9595d171 |
| genomic_resource_original.yaml | 1.95 KB | 4b05b645daff20a2a935128dbbc5ec33 |
| statistics/ |