DNase-seq_ENCSR885ZBV
DNase-seq ENCSR885ZBV [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
×
| Id: | DNase-seq/ENCSR885ZBV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR885ZBV [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF969PRK|/files/ENCFF969PRK/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR885ZBV | float |
DNase-seq_ENCSR885ZBV |
DNase-seq ENCSR885ZBV [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
|
|
[0.0711, 10.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF061CZZ.bed.gz | 649.89 KB | 4446da508247e28b6da0ece079d9e608 |
| ENCFF061CZZ.bed.gz.dvc | 100.0 B | ec999e53d95ce007daed535735b516d9 |
| ENCFF061CZZ.tabix.bed.gz | 592.62 KB | 93977a562fd7df8d2f7e72966daf227c |
| ENCFF061CZZ.tabix.bed.gz.dvc | 106.0 B | 034fc17174178c6ff038e9a90de0baad |
| ENCFF061CZZ.tabix.bed.gz.tbi | 252.56 KB | 02ffbcc317cc3b8dad1abf3095725438 |
| ENCFF061CZZ.tabix.bed.gz.tbi.dvc | 110.0 B | 71675759ddf99bacb68173f90115485c |
| genomic_resource.yaml | 2.28 KB | 142d08627d7c0c69d890e21355af4cbe |
| genomic_resource_original.yaml | 2.13 KB | dfd51c1df126325b1c5a802fc409c573 |
| statistics/ |