| Id: | DNase-seq/ENCSR885AWF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR885AWF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF441XVG|/files/ENCFF441XVG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 40408274 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR885AWF | float |
DNase-seq_ENCSR885AWF |
DNase-seq ENCSR885AWF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours"]
|
 |
[0.274, 33.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF549QJQ.bed.gz | 557.79 KB | 28d5503973a0c007e0de30905d9e1415 |
| ENCFF549QJQ.bed.gz.dvc | 100.0 B | 355cd7417eb6945750c38b85c5cdfb8d |
| ENCFF549QJQ.tabix.bed.gz | 505.71 KB | b84af8116f6ab73ef1f5f12828e7635f |
| ENCFF549QJQ.tabix.bed.gz.dvc | 106.0 B | ab7bd8aa55f3dd7da1eaa6863027072c |
| ENCFF549QJQ.tabix.bed.gz.tbi | 251.3 KB | 0213fb562bed0750db369567bbb8b3c4 |
| ENCFF549QJQ.tabix.bed.gz.tbi.dvc | 110.0 B | 2ff1e7d1187175adb29219ea2807e8df |
| genomic_resource.yaml | 2.43 KB | ef6a3f8746b92fb3f8ab3e9ed2b31b9d |
| genomic_resource_original.yaml | 2.21 KB | 3b4ba7f8549d764f3f7867639fb38d1f |
| statistics/ |