Resource

Id DNase-seq/ENCSR884ODJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR884ODJ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours"]
Description
Labels
  • accession: ENCSR884ODJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours
  • date_created: 2020-04-19T18:36:58.609180+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR884ODJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR884ODJ float

DNase-seq_ENCSR884ODJ
DNase-seq ENCSR884ODJ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR884ODJ [0.376, 69.1]
n
8,019,086
mean
7.5
sd
8.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 80190860.25% 44057
chr1 809571 0.33% 4437
chr2 567327 0.23% 3159
chr3 456621 0.23% 2515
chr4 283595 0.15% 1544
chr5 361916 0.20% 2035
chr6 476004 0.28% 2619
chr7 365571 0.23% 2009
chr8 312659 0.22% 1733
chr9 336523 0.24% 1858
chr10 352413 0.26% 1957
chr11 398553 0.30% 2200
chr12 404208 0.30% 2215
chr13 164916 0.14% 911
chr14 269033 0.25% 1474
chr15 265423 0.26% 1499
chr16 341314 0.38% 1837
chr17 467273 0.56% 2522
chr18 129956 0.16% 737
chr19 527633 0.90% 2746
chr20 232835 0.36% 1317
chr21 91522 0.20% 516
chr22 187792 0.37% 1032
chrX 208521 0.13% 1143
chrY 7907 0.01% 42
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44057 5 720 182.02 180
global segment-length histogram

Files

Filename Size md5
ENCFF456BGU.bed.gz 480.71 KB d68a5cdd36a8c797280a8e54baff5a25
ENCFF456BGU.tabix.bed.gz 433.93 KB 07d7eb63bb2a9441d3f61e7b527952d6
ENCFF456BGU.tabix.bed.gz.tbi 234.54 KB dc96a9615d59bd981c9f40612d78e104
genomic_resource.yaml 2.78 KB 92e7be280fae094e1a59bbbf7de3de44
statistics/