| Id: | DNase-seq/ENCSR884ODJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR884ODJ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF944ZRF|/files/ENCFF944ZRF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 26658518 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR884ODJ | float |
DNase-seq_ENCSR884ODJ |
DNase-seq ENCSR884ODJ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours"]
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[0.376, 69.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF456BGU.bed.gz | 480.71 KB | d68a5cdd36a8c797280a8e54baff5a25 |
| ENCFF456BGU.bed.gz.dvc | 100.0 B | 9b3774689aad8bfa470f494e824c1a39 |
| ENCFF456BGU.tabix.bed.gz | 433.93 KB | 07d7eb63bb2a9441d3f61e7b527952d6 |
| ENCFF456BGU.tabix.bed.gz.dvc | 106.0 B | e4a6df9bfe4df8decfc1201573eb461c |
| ENCFF456BGU.tabix.bed.gz.tbi | 234.54 KB | dc96a9615d59bd981c9f40612d78e104 |
| ENCFF456BGU.tabix.bed.gz.tbi.dvc | 110.0 B | df06246a15dcc1c9725a4f12f4eeb43b |
| genomic_resource.yaml | 2.78 KB | 92e7be280fae094e1a59bbbf7de3de44 |
| genomic_resource_original.yaml | 2.5 KB | fa5c96d67af322ee876745187c8e9d5b |
| statistics/ |