Resource
| Id | DNase-seq/ENCSR884MCZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR884MCZ [biosample_summary="Homo sapiens right kidney tissue female embryo (98 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (98 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN654JBV|/analyses/ENCAN654JBV/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF376JOV|/files/ENCFF376JOV/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 42365277 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF614MII|/files/ENCFF614MII/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 42097469 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR884MCZ | float |
DNase-seq_ENCSR884MCZ |
DNase-seq ENCSR884MCZ [biosample_summary="Homo sapiens right kidney tissue female embryo (98 days)"]
|
 |
[4, 1.26e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 17777280 | 0.55% | 118140 |
| chr1 | 1578046 | 0.63% | 10499 |
| chr2 | 1436599 | 0.59% | 9543 |
| chr3 | 1160877 | 0.59% | 7710 |
| chr4 | 955715 | 0.50% | 6357 |
| chr5 | 997371 | 0.55% | 6632 |
| chr6 | 1076613 | 0.63% | 7151 |
| chr7 | 919533 | 0.58% | 6101 |
| chr8 | 824321 | 0.57% | 5474 |
| chr9 | 729285 | 0.53% | 4843 |
| chr10 | 868293 | 0.65% | 5775 |
| chr11 | 904248 | 0.67% | 6009 |
| chr12 | 884093 | 0.66% | 5873 |
| chr13 | 508495 | 0.44% | 3381 |
| chr14 | 562709 | 0.53% | 3733 |
| chr15 | 565430 | 0.55% | 3761 |
| chr16 | 568350 | 0.63% | 3779 |
| chr17 | 709089 | 0.85% | 4716 |
| chr18 | 429772 | 0.53% | 2852 |
| chr19 | 604665 | 1.03% | 4027 |
| chr20 | 448580 | 0.70% | 2982 |
| chr21 | 205200 | 0.44% | 1361 |
| chr22 | 307772 | 0.61% | 2049 |
| chrX | 531324 | 0.34% | 3526 |
| chrY | 900 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 118140 | 26 | 450 | 150.48 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF717QSC.bed.gz | 1.12 MB | dd5ae833cb6671a6afcf5149945d08f9 |
| ENCFF717QSC.tabix.bed.gz | 981.47 KB | 83f9a81ad6f813aa67825fe5220f99b8 |
| ENCFF717QSC.tabix.bed.gz.tbi | 528.36 KB | d1ba6c1d83ce44a38347693a66f3c566 |
| genomic_resource.yaml | 2.6 KB | be8e7f05bcaab7c1856d92d04ba2517a |
| statistics/ |