Resource

Id DNase-seq/ENCSR883WDWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR883WDW [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (37 years) treated with Interleukin-6 for 4 hours"]
Description
Labels
  • accession: ENCSR883WDW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (37 years) treated with Interleukin-6 for 4 hours
  • date_created: 2018-11-30T18:43:54.966268+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR883WDW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (37 years) treated with Interleukin-6 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR883WDW float

DNase-seq_ENCSR883WDW

DNase-seq ENCSR883WDW [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (37 years) treated with Interleukin-6 for 4 hours"]
HISTOGRAM FOR DNase-seq_ENCSR883WDW [0.0447, 134]
n
15,552,426
mean
6.92
sd
12.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 155524260.48% 87954
chr1 1546040 0.62% 8769
chr2 1112431 0.46% 6372
chr3 828273 0.42% 4687
chr4 520478 0.27% 2965
chr5 688796 0.38% 3924
chr6 888304 0.52% 5078
chr7 724330 0.45% 4121
chr8 593913 0.41% 3392
chr9 622313 0.45% 3489
chr10 711743 0.53% 4028
chr11 814018 0.60% 4586
chr12 796741 0.60% 4490
chr13 331777 0.29% 1893
chr14 592745 0.55% 3373
chr15 500320 0.49% 2856
chr16 630400 0.70% 3520
chr17 948607 1.14% 5281
chr18 255635 0.32% 1448
chr19 919511 1.57% 5044
chr20 449388 0.70% 2554
chr21 198819 0.43% 1123
chr22 384935 0.76% 2171
chrX 492727 0.32% 2788
chrY 182 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 87954 12 720 176.82 169
global segment-length histogram

Files

Filename Size md5
ENCFF651ZFJ.bed.gz 1005.87 KB b4297b5ed9bc0c07f3cee1f4ffe50260
ENCFF651ZFJ.tabix.bed.gz 917.71 KB 54ce46179eaf89f75191b1939933ed0b
ENCFF651ZFJ.tabix.bed.gz.tbi 309.14 KB bd840f269fab54d50b5fccabea855c16
genomic_resource.yaml 1.46 KB 406255fdbbad152d37425db1d4bcdcb6
statistics/