Resource

Id DNase-seq/ENCSR881FBScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR881FBS [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (88 years)"]
Description
Labels
  • accession: ENCSR881FBS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue female adult (88 years)
  • date_created: 2020-05-28T00:56:21.964495+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR881FBS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (88 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR881FBS float

DNase-seq_ENCSR881FBS
DNase-seq ENCSR881FBS [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (88 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR881FBS [0.0571, 44.8]
n
18,221,412
mean
2.43
sd
3.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 182214120.57% 101523
chr1 1676603 0.67% 9359
chr2 1453553 0.60% 8084
chr3 965061 0.49% 5421
chr4 706302 0.37% 3969
chr5 869071 0.48% 4875
chr6 848831 0.50% 4800
chr7 900151 0.56% 5090
chr8 815373 0.56% 4561
chr9 827461 0.60% 4637
chr10 969683 0.72% 5401
chr11 1046615 0.77% 5802
chr12 826497 0.62% 4573
chr13 342322 0.30% 1946
chr14 581463 0.54% 3307
chr15 577174 0.57% 3281
chr16 742399 0.82% 4109
chr17 994773 1.19% 5436
chr18 343101 0.43% 1945
chr19 898815 1.53% 4747
chr20 580940 0.90% 3250
chr21 268567 0.57% 1481
chr22 595983 1.17% 3286
chrX 390328 0.25% 2160
chrY 346 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101523 1 980 179.48 180
global segment-length histogram

Files

Filename Size md5
ENCFF222AXX.bed.gz 1.09 MB c1636d61cfb8e59b1377682530db8721
ENCFF222AXX.tabix.bed.gz 1008.21 KB cc161a93fdf38aa03148d93cf4c97e33
ENCFF222AXX.tabix.bed.gz.tbi 369.4 KB 2e7da97f14bb5daaaf8169eda4de8e0a
genomic_resource.yaml 1.26 KB b5a734402e534e8a414e605942b71b89
statistics/