| Id: | DNase-seq/ENCSR881CRY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR881CRY [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF634HTR|/files/ENCFF634HTR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30589262 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR881CRY | float |
DNase-seq_ENCSR881CRY |
DNase-seq ENCSR881CRY [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"]
|
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[0.262, 65.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF011YWR.bed.gz | 583.58 KB | 91a15ec97e4af532c6d72afbb7eef371 |
| ENCFF011YWR.bed.gz.dvc | 100.0 B | 0c4818583ca71faa9b52a5f6ba7b5ad2 |
| ENCFF011YWR.tabix.bed.gz | 524.67 KB | 55ca75c08e7f1addaa002b6472bbc7da |
| ENCFF011YWR.tabix.bed.gz.dvc | 106.0 B | 5069b2bf41e062628883567423965091 |
| ENCFF011YWR.tabix.bed.gz.tbi | 262.1 KB | d1214f6a2b0d057cd3fe3e75398643ee |
| ENCFF011YWR.tabix.bed.gz.tbi.dvc | 110.0 B | 4edb0c34f419a201decde2a1c88061cc |
| genomic_resource.yaml | 2.45 KB | 8dbb462d87b013f7de8765f6abf5a657 |
| genomic_resource_original.yaml | 2.23 KB | 07267ac793669eecf0186222d0134dc4 |
| statistics/ |