DNase-seq_ENCSR880CUB
DNase-seq ENCSR880CUB [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (83 years)"]
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| Id: | DNase-seq/ENCSR880CUB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR880CUB [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (83 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (83 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF966VCS|/files/ENCFF966VCS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR880CUB | float |
DNase-seq_ENCSR880CUB |
DNase-seq ENCSR880CUB [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (83 years)"]
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[0.0342, 11] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF750DUU.bed.gz | 1.87 MB | 14a0e152a578d8a7abf40b7195020e84 |
| ENCFF750DUU.bed.gz.dvc | 101.0 B | eec7b2a59c4a2d4eb612a952a461a922 |
| ENCFF750DUU.tabix.bed.gz | 1.77 MB | fe5fa89081ba215c5dbc8a238c7733e4 |
| ENCFF750DUU.tabix.bed.gz.dvc | 107.0 B | a0f1ac3c61da5ab85b18971e3af42fbb |
| ENCFF750DUU.tabix.bed.gz.tbi | 291.09 KB | 6c797b090bfff8cb1d0acbf3f8df3b11 |
| ENCFF750DUU.tabix.bed.gz.tbi.dvc | 110.0 B | 04f82151670b27d3026766fd7f5b4804 |
| genomic_resource.yaml | 2.09 KB | b4882819576f845481b2d713e1317fcb |
| genomic_resource_original.yaml | 1.97 KB | 4147e7f2f6885173d2c9d04cbbe5a4e9 |
| statistics/ |