DNase-seq_ENCSR879XUH
DNase-seq ENCSR879XUH [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR879XUH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR879XUH [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF502IOV|/files/ENCFF502IOV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR879XUH | float |
DNase-seq_ENCSR879XUH |
DNase-seq ENCSR879XUH [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0609, 15] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF066MUO.bed.gz | 727.29 KB | e854bec9b01a37a6d694a0f33824489b |
| ENCFF066MUO.bed.gz.dvc | 100.0 B | 74510c9ecd1b7e3d1911261a4fe5d9c3 |
| ENCFF066MUO.tabix.bed.gz | 658.28 KB | f3db731358bed08a7705c92f9cbf182d |
| ENCFF066MUO.tabix.bed.gz.dvc | 106.0 B | 7c6bdef175444902cde0374a2e1e505a |
| ENCFF066MUO.tabix.bed.gz.tbi | 296.15 KB | 12e2134daf5270995d6179e6191d6c6e |
| ENCFF066MUO.tabix.bed.gz.tbi.dvc | 110.0 B | 2c5bce476baf7841dadeb6be03bae3d3 |
| genomic_resource.yaml | 2.15 KB | 671c9dd9fc4735bd141e1ee4c4536dd4 |
| genomic_resource_original.yaml | 2.02 KB | f0d1ae578a1b71dd0ca548426758255e |
| statistics/ |