Resource
| Id | DNase-seq/ENCSR879XUH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR879XUH [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF502IOV|/files/ENCFF502IOV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR879XUH | float |
DNase-seq_ENCSR879XUH |
DNase-seq ENCSR879XUH [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
|
 |
[0.0609, 15] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 12000303 | 0.37% | 66202 |
| chr1 | 1132890 | 0.46% | 6198 |
| chr2 | 920707 | 0.38% | 5131 |
| chr3 | 677060 | 0.34% | 3755 |
| chr4 | 448483 | 0.24% | 2487 |
| chr5 | 616658 | 0.34% | 3469 |
| chr6 | 632778 | 0.37% | 3474 |
| chr7 | 565457 | 0.35% | 3135 |
| chr8 | 528313 | 0.36% | 2962 |
| chr9 | 538002 | 0.39% | 2985 |
| chr10 | 607055 | 0.45% | 3379 |
| chr11 | 677540 | 0.50% | 3720 |
| chr12 | 574646 | 0.43% | 3157 |
| chr13 | 232485 | 0.20% | 1301 |
| chr14 | 401605 | 0.38% | 2224 |
| chr15 | 408462 | 0.40% | 2249 |
| chr16 | 456994 | 0.51% | 2486 |
| chr17 | 623214 | 0.75% | 3383 |
| chr18 | 222585 | 0.28% | 1272 |
| chr19 | 625493 | 1.07% | 3248 |
| chr20 | 368298 | 0.57% | 2062 |
| chr21 | 145297 | 0.31% | 822 |
| chr22 | 325464 | 0.64% | 1807 |
| chrX | 270390 | 0.17% | 1492 |
| chrY | 427 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 66202 | 1 | 860 | 181.27 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF066MUO.bed.gz | 727.29 KB | e854bec9b01a37a6d694a0f33824489b |
| ENCFF066MUO.tabix.bed.gz | 658.28 KB | f3db731358bed08a7705c92f9cbf182d |
| ENCFF066MUO.tabix.bed.gz.tbi | 296.15 KB | 12e2134daf5270995d6179e6191d6c6e |
| genomic_resource.yaml | 2.15 KB | 671c9dd9fc4735bd141e1ee4c4536dd4 |
| statistics/ |