Resource

Id DNase-seq/ENCSR879EVDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR879EVD [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (83 years)"]
Description
Labels
  • accession: ENCSR879EVD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue male adult (83 years)
  • date_created: 2020-12-15T22:21:53.878312+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR879EVD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (83 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR879EVD float

DNase-seq_ENCSR879EVD
DNase-seq ENCSR879EVD [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (83 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR879EVD [0.0599, 42.7]
n
21,044,537
mean
2.57
sd
3.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 210445370.65% 109822
chr1 1930972 0.78% 9984
chr2 1673848 0.69% 8820
chr3 1153420 0.58% 6009
chr4 789853 0.42% 4114
chr5 989165 0.54% 5240
chr6 1036029 0.61% 5422
chr7 1031048 0.65% 5451
chr8 919305 0.63% 4826
chr9 991562 0.72% 5196
chr10 1130513 0.84% 5850
chr11 1189390 0.88% 6200
chr12 973551 0.73% 5066
chr13 421372 0.37% 2226
chr14 694041 0.65% 3607
chr15 668311 0.66% 3513
chr16 810067 0.90% 4259
chr17 1109226 1.33% 5765
chr18 436893 0.54% 2298
chr19 1018472 1.74% 5112
chr20 648612 1.01% 3387
chr21 284134 0.61% 1486
chr22 620988 1.22% 3209
chrX 504524 0.32% 2676
chrY 19241 0.03% 106
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 109822 1 960 191.62 180
global segment-length histogram

Files

Filename Size md5
ENCFF101IGO.bed.gz 1.18 MB 3e3839a9a9f5b8c8453cfd2e8857c939
ENCFF101IGO.tabix.bed.gz 1.08 MB d1c2087b913c697993dd72dbdcc3ac18
ENCFF101IGO.tabix.bed.gz.tbi 394.4 KB b01541f03d31386a93587a7c760a99c9
genomic_resource.yaml 1.25 KB fc1cccff48b1a0cc9b95dd6e0fc18eb8
statistics/