Resource

Id DNase-seq/ENCSR878ITCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR878ITC [biosample_summary="Homo sapiens T-cell male adult (21 years)"]
Description
Labels
  • accession: ENCSR878ITC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (21 years)
  • date_created: 2020-04-12T19:00:07.574175+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR878ITC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR878ITC float

DNase-seq_ENCSR878ITC

DNase-seq ENCSR878ITC [biosample_summary="Homo sapiens T-cell male adult (21 years)"]
HISTOGRAM FOR DNase-seq_ENCSR878ITC [0.181, 92.4]
n
8,635,248
mean
7.91
sd
10.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 86352480.27% 48653
chr1 872567 0.35% 4916
chr2 594415 0.25% 3358
chr3 463106 0.23% 2621
chr4 295261 0.16% 1659
chr5 385820 0.21% 2168
chr6 508618 0.30% 2873
chr7 395989 0.25% 2247
chr8 312746 0.22% 1762
chr9 347006 0.25% 1948
chr10 382444 0.29% 2151
chr11 441006 0.33% 2487
chr12 434757 0.33% 2448
chr13 174175 0.15% 984
chr14 304768 0.28% 1711
chr15 275244 0.27% 1581
chr16 358644 0.40% 2026
chr17 539441 0.65% 3017
chr18 138632 0.17% 801
chr19 584186 1.00% 3194
chr20 246941 0.38% 1427
chr21 100402 0.21% 569
chr22 214978 0.42% 1222
chrX 254853 0.16% 1431
chrY 9249 0.02% 52
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48653 7 640 177.49 173
global segment-length histogram

Files

Filename Size md5
ENCFF458UYZ.bed.gz 543.92 KB ebe09c10b7a577edda721472a3f6cb74
ENCFF458UYZ.tabix.bed.gz 495.74 KB 6753295bc018d6ebb4378b561fef6a7a
ENCFF458UYZ.tabix.bed.gz.tbi 226.13 KB ab6dfd6a8930911d17d04a073a57ca25
genomic_resource.yaml 1.18 KB 8219630f5d15abc2d7e59584a3062c20
statistics/