Resource

Id DNase-seq/ENCSR875IVRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR875IVR [biosample_summary="Homo sapiens with multiple sclerosis; naive thymus-derived CD4-positive, alpha-beta T cell"]
Description
Labels
  • accession: ENCSR875IVR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens with multiple sclerosis; naive thymus-derived CD4-positive, alpha-beta T cell
  • date_created: 2022-01-25T19:15:17.834265+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR875IVR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: with multiple sclerosis
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR875IVR float

DNase-seq_ENCSR875IVR
DNase-seq ENCSR875IVR [biosample_summary="Homo sapiens with multiple sclerosis; naive thymus-derived CD4-positive, alpha-beta T cell"]
 HISTOGRAM FOR DNase-seq_ENCSR875IVR [0.0949, 44]
n
14,158,087
mean
3
sd
3.38

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 141580870.44% 62769
chr1 1410552 0.57% 6215
chr2 1069464 0.44% 4704
chr3 791132 0.40% 3536
chr4 541682 0.28% 2399
chr5 662030 0.36% 2900
chr6 875204 0.51% 3771
chr7 680651 0.43% 3058
chr8 543604 0.37% 2432
chr9 562987 0.41% 2526
chr10 654166 0.49% 2873
chr11 711363 0.53% 3174
chr12 738311 0.55% 3251
chr13 336155 0.29% 1445
chr14 492486 0.46% 2182
chr15 447816 0.44% 2042
chr16 519281 0.57% 2337
chr17 808277 0.97% 3563
chr18 239525 0.30% 1076
chr19 773748 1.32% 3379
chr20 373395 0.58% 1692
chr21 172736 0.37% 774
chr22 298065 0.59% 1380
chrX 455340 0.29% 2059
chrY 117 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 62769 2 1160 225.56 200
global segment-length histogram

Files

Filename Size md5
ENCFF735ILY.bed.gz 687.85 KB a9fadd96381bddcd9f369ffba8fa1842
ENCFF735ILY.tabix.bed.gz 637.0 KB 7ca8797cdc014ae08fffe271b8843157
ENCFF735ILY.tabix.bed.gz.tbi 278.94 KB 131ab880223e6057c52c86db3dcf7c36
genomic_resource.yaml 1.33 KB 4fc5d287000158ac264634381764130f
statistics/