Resource

Id DNase-seq/ENCSR874DUPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR874DUP [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
Description
Labels
  • accession: ENCSR874DUP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours
  • date_created: 2020-04-20T23:45:47.589066+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR874DUP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR874DUP float

DNase-seq_ENCSR874DUP
DNase-seq ENCSR874DUP [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR874DUP [0.17, 79.8]
n
9,117,270
mean
7.12
sd
8.51

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 91172700.28% 49911
chr1 933065 0.37% 5081
chr2 626142 0.26% 3436
chr3 497914 0.25% 2724
chr4 315231 0.17% 1717
chr5 407452 0.22% 2253
chr6 538869 0.32% 2922
chr7 408254 0.26% 2259
chr8 339158 0.23% 1875
chr9 362196 0.26% 1993
chr10 406437 0.30% 2246
chr11 467172 0.35% 2566
chr12 474660 0.36% 2586
chr13 184562 0.16% 1005
chr14 317884 0.30% 1731
chr15 292426 0.29% 1628
chr16 373495 0.41% 2035
chr17 567906 0.68% 3097
chr18 137736 0.17% 770
chr19 596282 1.02% 3182
chr20 258948 0.40% 1438
chr21 108018 0.23% 587
chr22 224811 0.44% 1238
chrX 269414 0.17% 1493
chrY 9238 0.02% 49
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49911 2 680 182.67 180
global segment-length histogram

Files

Filename Size md5
ENCFF004HKV.bed.gz 555.75 KB 97949ae600b560c61d81c5c5bf0f2f3a
ENCFF004HKV.tabix.bed.gz 507.43 KB 189f8536fe6fa1e51f5e715c8f6dfdde
ENCFF004HKV.tabix.bed.gz.tbi 232.78 KB 60141afa77f14ff903711784b297a46d
genomic_resource.yaml 1.77 KB 487c9b56e1b5f47bc1d2ac287523fdf8
statistics/