DNase-seq_ENCSR874CAK
DNase-seq ENCSR874CAK [biosample_summary="Homo sapiens large intestine tissue female embryo (108 days)"]
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| Id: | DNase-seq/ENCSR874CAK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR874CAK [biosample_summary="Homo sapiens large intestine tissue female embryo (108 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (108 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF912GWM|/files/ENCFF912GWM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR874CAK | float |
DNase-seq_ENCSR874CAK |
DNase-seq ENCSR874CAK [biosample_summary="Homo sapiens large intestine tissue female embryo (108 days)"]
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[0.135, 11.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF033GGY.bed.gz | 780.29 KB | a137219ff7156aaf283ba7c730dbdeaf |
| ENCFF033GGY.bed.gz.dvc | 100.0 B | 1ccdcd4b556e997422ebc6be752cc400 |
| ENCFF033GGY.tabix.bed.gz | 708.78 KB | 6b90bf19b55a992e5b3094e47f21d34f |
| ENCFF033GGY.tabix.bed.gz.dvc | 106.0 B | b77ae3169c755f1cdbf3f4690b4f4bf7 |
| ENCFF033GGY.tabix.bed.gz.tbi | 348.67 KB | 805dc7d3cc049d1964effea2b7946b0b |
| ENCFF033GGY.tabix.bed.gz.tbi.dvc | 110.0 B | e280233d64ceda79ca6a33a1199b05c9 |
| genomic_resource.yaml | 2.06 KB | 4432eafc541b81b9f297e63487d8b65e |
| genomic_resource_original.yaml | 1.95 KB | 15a15fd6cf35628800129119d1b6838f |
| statistics/ |