Resource

Id DNase-seq/ENCSR873ANEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR873ANE [biosample_summary="Homo sapiens kidney tissue female embryo (76 days) and male embryo (76 days)"]
Description
Labels
  • accession: ENCSR873ANE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue female embryo (76 days) and male embryo (76 days)
  • date_created: 2017-06-26T18:43:00.160590+00:00
  • date_released: 2017-12-13
  • doi: 10.17989/ENCSR873ANE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: female embryo (76 days) male embryo (76 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR873ANE float

DNase-seq_ENCSR873ANE
DNase-seq ENCSR873ANE [biosample_summary="Homo sapiens kidney tissue female embryo (76 days) and male embryo (76 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR873ANE [1, 1.35e+04]
n
30,749,903
mean
247
sd
455

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 307499030.96% 204653
chr1 2775116 1.11% 18481
chr2 2540238 1.05% 16906
chr3 1780042 0.90% 11836
chr4 1367619 0.72% 9094
chr5 1608572 0.89% 10711
chr6 1700115 1.00% 11319
chr7 1547081 0.97% 10294
chr8 1356056 0.93% 9017
chr9 1388473 1.00% 9229
chr10 1717324 1.28% 11432
chr11 1690279 1.25% 11248
chr12 1396797 1.05% 9300
chr13 743401 0.65% 4946
chr14 962085 0.90% 6402
chr15 1060676 1.04% 7063
chr16 1099989 1.22% 7324
chr17 1416601 1.70% 9435
chr18 737182 0.92% 4904
chr19 1058906 1.81% 7056
chr20 901691 1.40% 6001
chr21 426662 0.91% 2840
chr22 695673 1.37% 4633
chrX 761325 0.49% 5062
chrY 18000 0.03% 120
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 204653 5 515 150.25 150
global segment-length histogram

Files

Filename Size md5
ENCFF403LQM.bed.gz 1.97 MB 9cc58d68a4d7f06013a00cb4e3775aa4
ENCFF403LQM.tabix.bed.gz 1.69 MB f9170df1151cee57de846e4c70ff3ed6
ENCFF403LQM.tabix.bed.gz.tbi 608.08 KB 0d32179b37fcb173a84a702002736027
genomic_resource.yaml 1.51 KB 86c64056ece2256d7521c79f8dd6116c
statistics/