DNase-seq_ENCSR872IXQ
DNase-seq ENCSR872IXQ [biosample_summary="Homo sapiens T-helper 2 cell male adult (30 years)"]
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| Id: | DNase-seq/ENCSR872IXQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR872IXQ [biosample_summary="Homo sapiens T-helper 2 cell male adult (30 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (30 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF984EJT|/files/ENCFF984EJT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.40. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR872IXQ | float |
DNase-seq_ENCSR872IXQ |
DNase-seq ENCSR872IXQ [biosample_summary="Homo sapiens T-helper 2 cell male adult (30 years)"]
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[0.164, 29.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF583LPJ.bed.gz | 344.89 KB | af936588342611c2a25fea24e08874ee |
| ENCFF583LPJ.bed.gz.dvc | 100.0 B | 9c5c651bf7a0013cd96c1e25b6d68d39 |
| ENCFF583LPJ.tabix.bed.gz | 313.69 KB | b3100302c4eb6e1323ab226c0db75aaa |
| ENCFF583LPJ.tabix.bed.gz.dvc | 106.0 B | 1757cefbdc4010a5d8dcdbb74c5878fd |
| ENCFF583LPJ.tabix.bed.gz.tbi | 159.74 KB | cc5ded0756a5fbaa4a7a02a950808023 |
| ENCFF583LPJ.tabix.bed.gz.tbi.dvc | 110.0 B | 32c058a1d42f83e983c289e8c12575bc |
| genomic_resource.yaml | 2.02 KB | 7550dffd3063ce527e6249c6efa87eb6 |
| genomic_resource_original.yaml | 1.93 KB | 4761ef097f9ad4407c0f85a0652feedb |
| statistics/ |