DNase-seq_ENCSR868XPR
DNase-seq ENCSR868XPR [biosample_summary="Homo sapiens muscle of arm tissue male embryo (115 days)"]
×
| Id: | DNase-seq/ENCSR868XPR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR868XPR [biosample_summary="Homo sapiens muscle of arm tissue male embryo (115 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (115 days) output_type: peaks audit_warning: Alignment file {ENCFF176PMR|/files/ENCFF176PMR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 29056603 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF176PMR|/files/ENCFF176PMR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR868XPR | float |
DNase-seq_ENCSR868XPR |
DNase-seq ENCSR868XPR [biosample_summary="Homo sapiens muscle of arm tissue male embryo (115 days)"]
|
|
[0.276, 15.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF157GNV.bed.gz | 481.65 KB | 53a9d0e46f731d333523572b304f191d |
| ENCFF157GNV.bed.gz.dvc | 100.0 B | 91aa1c1937f84d7d14d3b3aab01f63f4 |
| ENCFF157GNV.tabix.bed.gz | 426.82 KB | 2bfdc56a877f88f95ed0baed97255904 |
| ENCFF157GNV.tabix.bed.gz.dvc | 106.0 B | 64f6b92199f94955b0141fe344a5b4fd |
| ENCFF157GNV.tabix.bed.gz.tbi | 278.39 KB | 3a8580140b34ee7b46edd124d14bf3c8 |
| ENCFF157GNV.tabix.bed.gz.tbi.dvc | 110.0 B | b95c6e45130b08a561e13f0ce2236667 |
| genomic_resource.yaml | 2.66 KB | 231bf5f3e5153d92d7876e6f482d7ef1 |
| genomic_resource_original.yaml | 2.56 KB | b732b8b7125d2d3d1640fffec94e8e53 |
| statistics/ |