DNase-seq_ENCSR866RCY
DNase-seq ENCSR866RCY [biosample_summary="Homo sapiens adrenal gland tissue female embryo (85 days)"]
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| Id: | DNase-seq/ENCSR866RCY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR866RCY [biosample_summary="Homo sapiens adrenal gland tissue female embryo (85 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (85 days) output_type: peaks audit_warning: Alignment file {ENCFF284UQW|/files/ENCFF284UQW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 26445848 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF284UQW|/files/ENCFF284UQW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR866RCY | float |
DNase-seq_ENCSR866RCY |
DNase-seq ENCSR866RCY [biosample_summary="Homo sapiens adrenal gland tissue female embryo (85 days)"]
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[0.304, 16] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF522YCT.bed.gz | 490.75 KB | 7fb9f4cb48e381569f16e4d53e3a34dc |
| ENCFF522YCT.bed.gz.dvc | 100.0 B | 08a027ff67993126cd326b195974f559 |
| ENCFF522YCT.tabix.bed.gz | 433.37 KB | 0097b4d393ee2dc5ce9481c33d5af764 |
| ENCFF522YCT.tabix.bed.gz.dvc | 106.0 B | 6cad0740b553b4259f2d9e12a84ba44a |
| ENCFF522YCT.tabix.bed.gz.tbi | 288.61 KB | 9b154f3dd33b6f196415d00a61fbc4a4 |
| ENCFF522YCT.tabix.bed.gz.tbi.dvc | 110.0 B | 6adbd07a39a38d476080d2979f203cda |
| genomic_resource.yaml | 2.67 KB | 324b6a38a3202cd59acee8f515a3a3e0 |
| genomic_resource_original.yaml | 2.56 KB | ba6239854d3984acabc9c466f4552cfe |
| statistics/ |