Resource
| Id | DNase-seq/ENCSR865CYW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR865CYW [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF096RBN|/files/ENCFF096RBN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR865CYW | float |
DNase-seq_ENCSR865CYW |
DNase-seq ENCSR865CYW [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
|
 |
[0.0344, 10.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 28903225 | 0.90% | 141998 |
| chr1 | 2601388 | 1.04% | 12502 |
| chr2 | 2808607 | 1.16% | 13613 |
| chr3 | 1620907 | 0.82% | 7942 |
| chr4 | 856467 | 0.45% | 4280 |
| chr5 | 1551003 | 0.85% | 7534 |
| chr6 | 1483036 | 0.87% | 7466 |
| chr7 | 1502631 | 0.94% | 7497 |
| chr8 | 1270547 | 0.88% | 6280 |
| chr9 | 1252592 | 0.91% | 6152 |
| chr10 | 1966226 | 1.47% | 9557 |
| chr11 | 1503316 | 1.11% | 7185 |
| chr12 | 1079506 | 0.81% | 5447 |
| chr13 | 662859 | 0.58% | 3290 |
| chr14 | 924556 | 0.86% | 4546 |
| chr15 | 1087765 | 1.07% | 5449 |
| chr16 | 920084 | 1.02% | 4599 |
| chr17 | 1214894 | 1.46% | 5979 |
| chr18 | 865688 | 1.08% | 4207 |
| chr19 | 980921 | 1.67% | 4943 |
| chr20 | 947226 | 1.47% | 4666 |
| chr21 | 397703 | 0.85% | 1956 |
| chr22 | 736826 | 1.45% | 3591 |
| chrX | 667410 | 0.43% | 3309 |
| chrY | 1067 | <0.01% | 8 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 141998 | 1 | 1040 | 203.55 | 190 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF396EDV.bed.gz | 1.39 MB | 4640942353f1109443f0b52504ac0697 |
| ENCFF396EDV.tabix.bed.gz | 1.31 MB | d7a75e634346925fbd5d74a86f417e17 |
| ENCFF396EDV.tabix.bed.gz.tbi | 293.09 KB | e2c98d1c213ef181b6b9faf66b183225 |
| genomic_resource.yaml | 2.14 KB | f6b3cca04faeeca76de8cf6f23f43547 |
| statistics/ |