DNase-seq_ENCSR865CYW
DNase-seq ENCSR865CYW [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR865CYW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR865CYW [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF096RBN|/files/ENCFF096RBN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR865CYW | float |
DNase-seq_ENCSR865CYW |
DNase-seq ENCSR865CYW [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0344, 10.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF396EDV.bed.gz | 1.39 MB | 4640942353f1109443f0b52504ac0697 |
| ENCFF396EDV.bed.gz.dvc | 101.0 B | 046f76ece38cfef123d58ac0e2c5fdf9 |
| ENCFF396EDV.tabix.bed.gz | 1.31 MB | d7a75e634346925fbd5d74a86f417e17 |
| ENCFF396EDV.tabix.bed.gz.dvc | 107.0 B | b5fa0439c216bcebf2f51af120984034 |
| ENCFF396EDV.tabix.bed.gz.tbi | 293.09 KB | e2c98d1c213ef181b6b9faf66b183225 |
| ENCFF396EDV.tabix.bed.gz.tbi.dvc | 110.0 B | 3b031e130f1080f8eb7d339480e3d2f4 |
| genomic_resource.yaml | 2.14 KB | f6b3cca04faeeca76de8cf6f23f43547 |
| genomic_resource_original.yaml | 2.01 KB | ae79012d51af15c5aa4d6fceac07edb3 |
| statistics/ |