Resource

Id DNase-seq/ENCSR862ZDVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR862ZDV [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell"]
Description
Labels
  • accession: ENCSR862ZDV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000897/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta memory T cell
  • date_created: 2022-02-07T22:20:21.304499+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR862ZDV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR862ZDV float

DNase-seq_ENCSR862ZDV

DNase-seq ENCSR862ZDV [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell"]
HISTOGRAM FOR DNase-seq_ENCSR862ZDV [0.0534, 87.9]
n
13,992,496
mean
5.24
sd
9.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 139924960.43% 71208
chr1 1387795 0.56% 7102
chr2 1028636 0.42% 5209
chr3 806221 0.41% 4091
chr4 533725 0.28% 2716
chr5 672333 0.37% 3418
chr6 871357 0.51% 4366
chr7 647759 0.41% 3317
chr8 546115 0.38% 2795
chr9 551743 0.40% 2829
chr10 657175 0.49% 3326
chr11 705045 0.52% 3634
chr12 713868 0.54% 3642
chr13 319334 0.28% 1619
chr14 499792 0.47% 2527
chr15 448053 0.44% 2325
chr16 521255 0.58% 2650
chr17 781352 0.94% 3940
chr18 239409 0.30% 1249
chr19 768926 1.31% 3827
chr20 368297 0.57% 1877
chr21 162728 0.35% 844
chr22 299708 0.59% 1543
chrX 461750 0.30% 2361
chrY 120 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71208 4 1080 196.5 180
global segment-length histogram

Files

Filename Size md5
ENCFF922ABK.bed.gz 796.93 KB 2e0fe6a98c898ac12b85b4c8fc2b39f3
ENCFF922ABK.tabix.bed.gz 732.31 KB c555210aac3e3d6aed937505d95ee892
ENCFF922ABK.tabix.bed.gz.tbi 294.95 KB df08a55cf70696f3058e9dc50dbe5402
genomic_resource.yaml 1.17 KB fa77c7f81f2fd38607aca1ee6f8a4077
statistics/