DNase-seq_ENCSR862SQC
DNase-seq ENCSR862SQC [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (84 years)"]
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| Id: | DNase-seq/ENCSR862SQC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR862SQC [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (84 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (84 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF359FJQ|/files/ENCFF359FJQ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR862SQC | float |
DNase-seq_ENCSR862SQC |
DNase-seq ENCSR862SQC [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (84 years)"]
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[0.0571, 19.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF060BYF.bed.gz | 1.24 MB | 0140ed8f98e70571031de11a760dbdc0 |
| ENCFF060BYF.bed.gz.dvc | 101.0 B | 615776e514cb0663ebea552046417b79 |
| ENCFF060BYF.tabix.bed.gz | 1.13 MB | 89f5974cf47f7eeec03cd6c048cb0834 |
| ENCFF060BYF.tabix.bed.gz.dvc | 107.0 B | 2d349acdcbff86995182072de40ae864 |
| ENCFF060BYF.tabix.bed.gz.tbi | 504.71 KB | 7f193e0847e5775d7799c35b8449aa24 |
| ENCFF060BYF.tabix.bed.gz.tbi.dvc | 110.0 B | c509b0d88c86915542274da088dd7183 |
| genomic_resource.yaml | 2.06 KB | d8e304804b867e1f6bb7234f26fd20dd |
| genomic_resource_original.yaml | 1.95 KB | e6b9eff4bbd10da6436ae9b94156698f |
| statistics/ |