| Id: | DNase-seq/ENCSR860IDO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR860IDO [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF248FIH|/files/ENCFF248FIH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 26368858 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR860IDO | float |
DNase-seq_ENCSR860IDO |
DNase-seq ENCSR860IDO [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
|
 |
[0.418, 42.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF568NDJ.bed.gz | 348.87 KB | 6f4916fc01292291844681ba01f8581f |
| ENCFF568NDJ.bed.gz.dvc | 100.0 B | 2522c5af4ead9bc7d01008ff5e7fa912 |
| ENCFF568NDJ.tabix.bed.gz | 315.02 KB | 0a03e99585f667ab9c3071586e507859 |
| ENCFF568NDJ.tabix.bed.gz.dvc | 106.0 B | 5ab6b3a0fa9c97678cc152b342ca66ff |
| ENCFF568NDJ.tabix.bed.gz.tbi | 178.16 KB | 02132acdbc43352ab996dfeeac13da2b |
| ENCFF568NDJ.tabix.bed.gz.tbi.dvc | 110.0 B | 905714f19505fd998bc52f81a4fe3b00 |
| genomic_resource.yaml | 2.25 KB | 61a99d4aeea16250e9cc3f117abf7f7f |
| genomic_resource_original.yaml | 2.06 KB | fe8e18bac3a7d06d94ae5d084f427073 |
| statistics/ |