DNase-seq_ENCSR859LTL
DNase-seq ENCSR859LTL [biosample_summary="Homo sapiens breast epithelium tissue female adult (51 years)"]
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| Id: | DNase-seq/ENCSR859LTL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR859LTL [biosample_summary="Homo sapiens breast epithelium tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN940WZV|/analyses/ENCAN940WZV/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF768ZNH|/files/ENCFF768ZNH/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR859LTL | float |
DNase-seq_ENCSR859LTL |
DNase-seq ENCSR859LTL [biosample_summary="Homo sapiens breast epithelium tissue female adult (51 years)"]
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[7, 1.77e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF889FYM.bed.gz | 844.02 KB | 07682b9cd41cf6f57dc6792c89b869c9 |
| ENCFF889FYM.bed.gz.dvc | 100.0 B | c8bac11a509d4b3441e98ece961dab5b |
| ENCFF889FYM.tabix.bed.gz | 720.84 KB | 5cb519f4090c4a8c48134a3808cd3ce2 |
| ENCFF889FYM.tabix.bed.gz.dvc | 106.0 B | dd7f95ca1c5481b08a1d3c1f2fbea098 |
| ENCFF889FYM.tabix.bed.gz.tbi | 356.93 KB | 537250672db64e858246968de4f9d81b |
| ENCFF889FYM.tabix.bed.gz.tbi.dvc | 110.0 B | 6c8a657dd99079f7dd6e8308750a8263 |
| genomic_resource.yaml | 2.22 KB | a16e827fe262d4aded9ecf270241cd74 |
| genomic_resource_original.yaml | 2.11 KB | 1eaa26aa41deda870e94e3725618d035 |
| statistics/ |