Resource

Id DNase-seq/ENCSR859KGQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR859KGQ [biosample_summary="Homo sapiens right lung tissue female embryo (107 days)"]
Description
Labels
  • accession: ENCSR859KGQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002167/
  • biosample_summary: Homo sapiens right lung tissue female embryo (107 days)
  • date_created: 2015-09-16T21:42:52.714111+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR859KGQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (107 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR859KGQ float

DNase-seq_ENCSR859KGQ
DNase-seq ENCSR859KGQ [biosample_summary="Homo sapiens right lung tissue female embryo (107 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR859KGQ [0.227, 24.1]
n
12,038,801
mean
3.43
sd
3.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 120388010.37% 60500
chr1 1091598 0.44% 5413
chr2 976165 0.40% 4897
chr3 772159 0.39% 3903
chr4 603648 0.32% 3069
chr5 664852 0.37% 3339
chr6 729045 0.43% 3657
chr7 625975 0.39% 3180
chr8 546810 0.38% 2776
chr9 508335 0.37% 2521
chr10 609063 0.46% 3093
chr11 617454 0.46% 3103
chr12 600413 0.45% 3004
chr13 335623 0.29% 1731
chr14 371006 0.35% 1868
chr15 388838 0.38% 1958
chr16 375111 0.42% 1905
chr17 516719 0.62% 2566
chr18 262175 0.33% 1348
chr19 488310 0.83% 2277
chr20 306156 0.48% 1565
chr21 124952 0.27% 607
chr22 204138 0.40% 1045
chrX 319996 0.21% 1673
chrY 260 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 60500 1 1020 198.99 188
global segment-length histogram

Files

Filename Size md5
ENCFF077UQA.bed.gz 639.9 KB 3b568d6036105967e513c5bbed8c7eb9
ENCFF077UQA.tabix.bed.gz 577.06 KB 1d100eb0d530cb0f6d512b95cb123718
ENCFF077UQA.tabix.bed.gz.tbi 318.3 KB 777646cb33f2b0b1fd2577d9e56d33f2
genomic_resource.yaml 1.84 KB 9f741207b6dfa0acd42da34b4b19b1f9
statistics/