DNase-seq_ENCSR859HEW
DNase-seq ENCSR859HEW [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR859HEW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR859HEW [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF988IAR|/files/ENCFF988IAR/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.26. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR859HEW | float |
DNase-seq_ENCSR859HEW |
DNase-seq ENCSR859HEW [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0881, 10.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF881MYD.bed.gz | 353.74 KB | 35133c12d18c065f00e02f093cac0710 |
| ENCFF881MYD.bed.gz.dvc | 100.0 B | 84a5073b667d5691573cf51801c8b39b |
| ENCFF881MYD.tabix.bed.gz | 318.36 KB | f9e46d7edd44eb092d2856244638175e |
| ENCFF881MYD.tabix.bed.gz.dvc | 106.0 B | cd4c8649b8e97cb38a802eaa4bf3e33e |
| ENCFF881MYD.tabix.bed.gz.tbi | 188.32 KB | 46df16596e19960fe133c91874157c1e |
| ENCFF881MYD.tabix.bed.gz.tbi.dvc | 110.0 B | be5fa047eed43f40fea6e234b78f0088 |
| genomic_resource.yaml | 2.28 KB | 26ed2b6007a1ae6ddd0823c8543e3c05 |
| genomic_resource_original.yaml | 2.13 KB | 27c6417d696b82d6749750148153e683 |
| statistics/ |