Resource

Id DNase-seq/ENCSR859CZMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR859CZM [biosample_summary="Homo sapiens occipital lobe tissue male adult (84 years)"]
Description
Labels
  • accession: ENCSR859CZM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002021/
  • biosample_summary: Homo sapiens occipital lobe tissue male adult (84 years)
  • date_created: 2015-03-28T05:43:35.492209+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR859CZM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (84 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR859CZM float

DNase-seq_ENCSR859CZM
DNase-seq ENCSR859CZM [biosample_summary="Homo sapiens occipital lobe tissue male adult (84 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR859CZM [5, 2.81e+04]
n
41,572,228
mean
219
sd
233

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 415722281.29% 276872
chr1 3791500 1.52% 25257
chr2 3369545 1.39% 22435
chr3 2781298 1.40% 18529
chr4 2154895 1.13% 14353
chr5 2495396 1.37% 16621
chr6 2451708 1.44% 16327
chr7 2199712 1.38% 14654
chr8 2044738 1.41% 13612
chr9 1733975 1.25% 11550
chr10 1931118 1.44% 12855
chr11 2159909 1.60% 14388
chr12 2051932 1.54% 13666
chr13 1179446 1.03% 7854
chr14 1333124 1.25% 8883
chr15 1344357 1.32% 8955
chr16 1308747 1.45% 8713
chr17 1560440 1.87% 10391
chr18 995203 1.24% 6624
chr19 1124476 1.92% 7489
chr20 1045620 1.62% 6968
chr21 509309 1.09% 3392
chr22 739773 1.46% 4930
chrX 1175182 0.75% 7821
chrY 90825 0.16% 605
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 276872 4 444 150.15 150
global segment-length histogram

Files

Filename Size md5
ENCFF121NZP.bed.gz 2.68 MB 4edd5eedb375e84c205140e914319530
ENCFF121NZP.tabix.bed.gz 2.3 MB d310011132d4b89e9735076f7d2e6d64
ENCFF121NZP.tabix.bed.gz.tbi 733.91 KB ce317b9f31e5c436ff92af21479df15d
genomic_resource.yaml 1.4 KB 6130698817b961432240bd9ce6e73441
statistics/