DNase-seq_ENCSR856XLJ
DNase-seq ENCSR856XLJ [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (51 years)"]
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| Id: | DNase-seq/ENCSR856XLJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR856XLJ [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN718WPR|/analyses/ENCAN718WPR/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF901FRT|/files/ENCFF901FRT/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR856XLJ | float |
DNase-seq_ENCSR856XLJ |
DNase-seq ENCSR856XLJ [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (51 years)"]
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[5, 1.63e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF370NBX.bed.gz | 738.04 KB | 6eee951ee328718c00c28bd8bc4aaf76 |
| ENCFF370NBX.bed.gz.dvc | 100.0 B | 998858849aabe9ccf26a4de5b8991fdb |
| ENCFF370NBX.tabix.bed.gz | 628.4 KB | dd2749fddf463792daa2907e15b53ea5 |
| ENCFF370NBX.tabix.bed.gz.dvc | 106.0 B | e07a49f4b8ee9e4cbe017be96453a1cd |
| ENCFF370NBX.tabix.bed.gz.tbi | 332.11 KB | 42437f6ea7bc15b50b0620dd3642f03b |
| ENCFF370NBX.tabix.bed.gz.tbi.dvc | 110.0 B | 7a524ce1b139b83947af8f7f374dc3b8 |
| genomic_resource.yaml | 2.24 KB | fb8f2cdf6a5ceb6e22a9ce04714957bf |
| genomic_resource_original.yaml | 2.13 KB | 05e8e1f1631b24bd983c4433145043ef |
| statistics/ |