DNase-seq_ENCSR856XGY
DNase-seq ENCSR856XGY [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (89 years)"]
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| Id: | DNase-seq/ENCSR856XGY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR856XGY [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (89 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (89 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF241GPY|/files/ENCFF241GPY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR856XGY | float |
DNase-seq_ENCSR856XGY |
DNase-seq ENCSR856XGY [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (89 years)"]
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[0.0543, 23.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF532EQE.bed.gz | 1002.61 KB | 7940fa710e9bd013cd968b061eed3106 |
| ENCFF532EQE.bed.gz.dvc | 101.0 B | 5bbc5c791cee9acfcb75b88d2ca29f36 |
| ENCFF532EQE.tabix.bed.gz | 916.82 KB | 785e94f6d3bb09df0b6307dd31b5c606 |
| ENCFF532EQE.tabix.bed.gz.dvc | 106.0 B | fd6fffc5cdfb6b36378990ba99cb8645 |
| ENCFF532EQE.tabix.bed.gz.tbi | 327.16 KB | 6f5432864d15577be1bac76613860c9b |
| ENCFF532EQE.tabix.bed.gz.tbi.dvc | 110.0 B | 095070d3d7d061ac262fd9aef41b1785 |
| genomic_resource.yaml | 2.21 KB | ca94f155511a01cfcecfdddcdcf0e15c |
| genomic_resource_original.yaml | 2.07 KB | 45f2fe833dbe9f921a5e445bb0852732 |
| statistics/ |