DNase-seq_ENCSR856NXV
DNase-seq ENCSR856NXV [biosample_summary="Homo sapiens cardiac fibroblast female embryo (94 days) and female embryo (98 days)"]
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| Id: | DNase-seq/ENCSR856NXV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR856NXV [biosample_summary="Homo sapiens cardiac fibroblast female embryo (94 days) and female embryo (98 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (94 days) female embryo (98 days) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF019IAD|/files/ENCFF019IAD/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.23. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN163IRG|/analyses/ENCAN163IRG/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR856NXV | float |
DNase-seq_ENCSR856NXV |
DNase-seq ENCSR856NXV [biosample_summary="Homo sapiens cardiac fibroblast female embryo (94 days) and female embryo (98 days)"]
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[2, 1.64e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF396GMA.bed.gz | 2.66 MB | 023fc85f5f40adb26f58472f059a6eda |
| ENCFF396GMA.bed.gz.dvc | 101.0 B | c98671a70cf3fd7bba6f5cb71a4c9255 |
| ENCFF396GMA.tabix.bed.gz | 2.31 MB | b5edcf04de4c624b570700ed93b2f55e |
| ENCFF396GMA.tabix.bed.gz.dvc | 107.0 B | 3c1a5f2dd50077222c5fe6463950cb98 |
| ENCFF396GMA.tabix.bed.gz.tbi | 793.59 KB | 6fa100dd784bbe8894705a20fa654a6a |
| ENCFF396GMA.tabix.bed.gz.tbi.dvc | 110.0 B | 35291b963c7ee33e05f861c756cb6b92 |
| genomic_resource.yaml | 2.33 KB | 93335bdc570b7557f8f9e972534b7393 |
| genomic_resource_original.yaml | 2.21 KB | 722bbe2db2496d6f99bd7aea3728274c |
| statistics/ |