| Id: | DNase-seq/ENCSR855FOP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR855FOP [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 13 days, kit ligand for 13 days, hydrocortisone succinate for 13 days, erythropoietin for 13 days"] |
| Description: |
status: released biological_replicates: Rep 2 summary: male adult (25 years) treated with interleukin-3 for 13 days, kit ligand for 13 days, hydrocortisone succinate for 13 days, erythropoietin for 13 days output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF401MDW|/files/ENCFF401MDW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.23. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF741PWD|/files/ENCFF741PWD/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.18. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN851ACE|/analyses/ENCAN851ACE/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR855FOP | float |
DNase-seq_ENCSR855FOP |
DNase-seq ENCSR855FOP [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 13 days, kit ligand for 13 days, hydrocortisone succinate for 13 days, erythropoietin for 13 days"]
|
 |
[6, 8.48e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF841LEO.bed.gz | 1007.75 KB | 84e5c7c48a2f1008adabd008106c9b83 |
| ENCFF841LEO.bed.gz.dvc | 101.0 B | 2ba019d101e38a8bcf22efe40820b0f8 |
| ENCFF841LEO.tabix.bed.gz | 868.66 KB | b7f663139c577accf2d7493ec84ee6c9 |
| ENCFF841LEO.tabix.bed.gz.dvc | 106.0 B | 7df4a50559f6b942c7f99d2817068a6c |
| ENCFF841LEO.tabix.bed.gz.tbi | 358.75 KB | 16e6a05a699cb94da6017dba13ffd819 |
| ENCFF841LEO.tabix.bed.gz.tbi.dvc | 110.0 B | 425bbfbcc0a9013a0a2fb84457f15b9e |
| genomic_resource.yaml | 3.67 KB | 88aba26a8cd1826d4a0670e647cb5803 |
| genomic_resource_original.yaml | 3.45 KB | 5d0f6708951f96d0ce650d6ba5e06043 |
| statistics/ |