Resource

Id DNase-seq/ENCSR851ZFTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR851ZFT [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (89 days)"]
Description
Labels
  • accession: ENCSR851ZFT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0005270/
  • biosample_summary: Homo sapiens renal cortex interstitium tissue female embryo (89 days)
  • date_created: 2015-09-16T21:42:33.034601+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR851ZFT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (89 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR851ZFT float

DNase-seq_ENCSR851ZFT
DNase-seq ENCSR851ZFT [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (89 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR851ZFT [0.167, 23.8]
n
12,697,342
mean
2.78
sd
2.93

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 126973420.39% 68176
chr1 1154093 0.46% 6174
chr2 1002332 0.41% 5358
chr3 830977 0.42% 4468
chr4 670129 0.35% 3622
chr5 714258 0.39% 3843
chr6 784430 0.46% 4195
chr7 654688 0.41% 3516
chr8 562901 0.39% 3021
chr9 536377 0.39% 2857
chr10 619383 0.46% 3361
chr11 656462 0.49% 3520
chr12 640602 0.48% 3421
chr13 333719 0.29% 1834
chr14 412013 0.38% 2177
chr15 412524 0.40% 2240
chr16 397688 0.44% 2146
chr17 496652 0.60% 2642
chr18 300812 0.37% 1650
chr19 499712 0.85% 2526
chr20 323298 0.50% 1791
chr21 132817 0.28% 728
chr22 205499 0.40% 1113
chrX 355714 0.23% 1971
chrY 262 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 68176 2 940 186.24 180
global segment-length histogram

Files

Filename Size md5
ENCFF258PML.bed.gz 724.12 KB e4a8026eea2bf42f351131da150c0e2c
ENCFF258PML.tabix.bed.gz 646.31 KB 163f7d566447f646bd9111e3a1c2f57d
ENCFF258PML.tabix.bed.gz.tbi 359.5 KB b26f0fc9be6a1c3220535138bd2f4a42
genomic_resource.yaml 1.88 KB 5f8bc609e6f59e9191c1948521010185
statistics/