DNase-seq_ENCSR849WGE
DNase-seq ENCSR849WGE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (84 years)"]
×
| Id: | DNase-seq/ENCSR849WGE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR849WGE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (84 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (84 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF525DQO|/files/ENCFF525DQO/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR849WGE | float |
DNase-seq_ENCSR849WGE |
DNase-seq ENCSR849WGE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (84 years)"]
|
|
[0.0722, 10.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF100UJA.bed.gz | 584.1 KB | d30dcfac090b2dda4d993aecf86de910 |
| ENCFF100UJA.bed.gz.dvc | 100.0 B | 9ab8cc80ab6897138fbc62c58ea5cc10 |
| ENCFF100UJA.tabix.bed.gz | 529.68 KB | db4764c7549f07c60c6b8be74a665c71 |
| ENCFF100UJA.tabix.bed.gz.dvc | 106.0 B | 1b9f1537edc855b99b492da738f4ae04 |
| ENCFF100UJA.tabix.bed.gz.tbi | 256.85 KB | 717d6125d852b38bbcc7bcd2aa9996a5 |
| ENCFF100UJA.tabix.bed.gz.tbi.dvc | 110.0 B | 0155bd4c6d95158b614b5017cd2d59d4 |
| genomic_resource.yaml | 2.08 KB | 488b7479ad305f5c7eabb3129f5b8ce3 |
| genomic_resource_original.yaml | 1.97 KB | 3dbaeb8434dd58c28fea1ca8c863c2b0 |
| statistics/ |