DNase-seq_ENCSR849OKE
DNase-seq ENCSR849OKE [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (127 days)"]
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| Id: | DNase-seq/ENCSR849OKE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR849OKE [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (127 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (127 days) output_type: peaks audit_warning: Alignment file {ENCFF389PCQ|/files/ENCFF389PCQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 38617784 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF389PCQ|/files/ENCFF389PCQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR849OKE | float |
DNase-seq_ENCSR849OKE |
DNase-seq ENCSR849OKE [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (127 days)"]
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[0.182, 12.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF746ACO.bed.gz | 397.72 KB | 6ef03a673f2a2313d77a57873f9c4042 |
| ENCFF746ACO.bed.gz.dvc | 100.0 B | 79d6c1202d237af2c819641c766fca75 |
| ENCFF746ACO.tabix.bed.gz | 360.4 KB | 2174325ad79ae2e7be99710e4ac08cc6 |
| ENCFF746ACO.tabix.bed.gz.dvc | 106.0 B | 5e47e7fe69c3550956bc35cf11316c6c |
| ENCFF746ACO.tabix.bed.gz.tbi | 216.25 KB | a8e90e5904165c2f51dc80af215f53e8 |
| ENCFF746ACO.tabix.bed.gz.tbi.dvc | 110.0 B | 9e074900c6963ff332d7f1c2ca3c1521 |
| genomic_resource.yaml | 2.7 KB | 0b67ca562d9789578203c0416f392b3c |
| genomic_resource_original.yaml | 2.59 KB | d4e1169a43f77e05133b5aea0a4239d9 |
| statistics/ |