DNase-seq_ENCSR849CYU
DNase-seq ENCSR849CYU [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR849CYU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR849CYU [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF638KHD|/files/ENCFF638KHD/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR849CYU | float |
DNase-seq_ENCSR849CYU |
DNase-seq ENCSR849CYU [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0296, 16.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF548PLG.bed.gz | 1.26 MB | 1dd7fe6cebd596804cf025d6be89a0e5 |
| ENCFF548PLG.bed.gz.dvc | 101.0 B | fb34c0d9139b8961a51cf106a4243ea8 |
| ENCFF548PLG.tabix.bed.gz | 1.16 MB | fc80e5936d0bedb7a0a03fcff1c7e595 |
| ENCFF548PLG.tabix.bed.gz.dvc | 107.0 B | ae1938a96121e5d42a52e4767b67ef18 |
| ENCFF548PLG.tabix.bed.gz.tbi | 360.07 KB | 40fcd6bc284bca63eabfc37eb25be6da |
| ENCFF548PLG.tabix.bed.gz.tbi.dvc | 110.0 B | 75268e43d835a419996b5849f7021771 |
| genomic_resource.yaml | 2.28 KB | cce435a68912182fc11efb8e4a191e10 |
| genomic_resource_original.yaml | 2.12 KB | 60f848cb24a6d673efeb46f4885c0510 |
| statistics/ |