DNase-seq_ENCSR846VGZ
DNase-seq ENCSR846VGZ [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR846VGZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR846VGZ [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF129OBE|/files/ENCFF129OBE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR846VGZ | float |
DNase-seq_ENCSR846VGZ |
DNase-seq ENCSR846VGZ [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0626, 9.24] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF319VYE.bed.gz | 832.3 KB | bd71de671d7ba759d5f1380614d1953f |
| ENCFF319VYE.bed.gz.dvc | 100.0 B | 890638bb278ec5a89554dabde0e97726 |
| ENCFF319VYE.tabix.bed.gz | 773.69 KB | 2ab42fefc75c6aec5514b1aff53415bb |
| ENCFF319VYE.tabix.bed.gz.dvc | 106.0 B | 4136828fd04ef025bd7f2894ec64f441 |
| ENCFF319VYE.tabix.bed.gz.tbi | 222.15 KB | a1ca3810f44c490b8bf7cca2c37e3375 |
| ENCFF319VYE.tabix.bed.gz.tbi.dvc | 110.0 B | 7d732a2c8be361fec628a0de6c4171f4 |
| genomic_resource.yaml | 2.13 KB | 1263d26fdc2729123e410b2b37f61605 |
| genomic_resource_original.yaml | 2.01 KB | b93d8bd51134e46ddfcb11ca9367fe15 |
| statistics/ |